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<?php
/*
* Copyright 2010 Google Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not
* use this file except in compliance with the License. You may obtain a copy of
* the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations under
* the License.
*/
/**
* Service definition for Genomics (v1beta).
*
* <p>
* Provides access to Genomics data.
* </p>
*
* <p>
* For more information about this service, see the API
* <a href="https://developers.google.com/genomics/v1beta/reference" target="_blank">Documentation</a>
* </p>
*
* @author Google, Inc.
*/
class Analytify_Google_Service_Genomics extends Analytify_Google_Service
{
/** View and manage your data in Google BigQuery. */
const BIGQUERY = "https://www.googleapis.com/auth/bigquery";
/** Manage your data in Google Cloud Storage. */
const DEVSTORAGE_READ_WRITE = "https://www.googleapis.com/auth/devstorage.read_write";
/** View and manage Genomics data. */
const GENOMICS = "https://www.googleapis.com/auth/genomics";
/** View Genomics data. */
const GENOMICS_READONLY = "https://www.googleapis.com/auth/genomics.readonly";
public $beacons;
public $callsets;
public $datasets;
public $experimental_jobs;
public $jobs;
public $reads;
public $readsets;
public $variants;
/**
* Constructs the internal representation of the Genomics service.
*
* @param Analytify_Google_Client $client
*/
public function __construct(Analytify_Google_Client $client)
{
parent::__construct($client);
$this->servicePath = 'genomics/v1beta/';
$this->version = 'v1beta';
$this->serviceName = 'genomics';
$this->beacons = new Analytify_Google_Service_Genomics_Beacons_Resource(
$this,
$this->serviceName,
'beacons',
array(
'methods' => array(
'get' => array(
'path' => 'beacons/{datasetId}',
'httpMethod' => 'GET',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'allele' => array(
'location' => 'query',
'type' => 'string',
),
'contig' => array(
'location' => 'query',
'type' => 'string',
),
'position' => array(
'location' => 'query',
'type' => 'string',
),
),
),
)
)
);
$this->callsets = new Analytify_Google_Service_Genomics_Callsets_Resource(
$this,
$this->serviceName,
'callsets',
array(
'methods' => array(
'create' => array(
'path' => 'callsets',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'callsets/{callsetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'callsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'callsets/{callsetId}',
'httpMethod' => 'GET',
'parameters' => array(
'callsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'patch' => array(
'path' => 'callsets/{callsetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'callsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'callsets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),'update' => array(
'path' => 'callsets/{callsetId}',
'httpMethod' => 'PUT',
'parameters' => array(
'callsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),
)
)
);
$this->datasets = new Analytify_Google_Service_Genomics_Datasets_Resource(
$this,
$this->serviceName,
'datasets',
array(
'methods' => array(
'create' => array(
'path' => 'datasets',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'datasets/{datasetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'datasets/{datasetId}',
'httpMethod' => 'GET',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'list' => array(
'path' => 'datasets',
'httpMethod' => 'GET',
'parameters' => array(
'pageToken' => array(
'location' => 'query',
'type' => 'string',
),
'maxResults' => array(
'location' => 'query',
'type' => 'string',
),
'projectId' => array(
'location' => 'query',
'type' => 'string',
),
),
),'patch' => array(
'path' => 'datasets/{datasetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'undelete' => array(
'path' => 'datasets/{datasetId}/undelete',
'httpMethod' => 'POST',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'update' => array(
'path' => 'datasets/{datasetId}',
'httpMethod' => 'PUT',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),
)
)
);
$this->experimental_jobs = new Analytify_Google_Service_Genomics_ExperimentalJobs_Resource(
$this,
$this->serviceName,
'jobs',
array(
'methods' => array(
'create' => array(
'path' => 'experimental/jobs/create',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->jobs = new Analytify_Google_Service_Genomics_Jobs_Resource(
$this,
$this->serviceName,
'jobs',
array(
'methods' => array(
'cancel' => array(
'path' => 'jobs/{jobId}/cancel',
'httpMethod' => 'POST',
'parameters' => array(
'jobId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'jobs/{jobId}',
'httpMethod' => 'GET',
'parameters' => array(
'jobId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'jobs/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->reads = new Analytify_Google_Service_Genomics_Reads_Resource(
$this,
$this->serviceName,
'reads',
array(
'methods' => array(
'search' => array(
'path' => 'reads/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->readsets = new Analytify_Google_Service_Genomics_Readsets_Resource(
$this,
$this->serviceName,
'readsets',
array(
'methods' => array(
'delete' => array(
'path' => 'readsets/{readsetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'readsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'export' => array(
'path' => 'readsets/export',
'httpMethod' => 'POST',
'parameters' => array(),
),'get' => array(
'path' => 'readsets/{readsetId}',
'httpMethod' => 'GET',
'parameters' => array(
'readsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'import' => array(
'path' => 'readsets/import',
'httpMethod' => 'POST',
'parameters' => array(),
),'patch' => array(
'path' => 'readsets/{readsetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'readsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'readsets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),'update' => array(
'path' => 'readsets/{readsetId}',
'httpMethod' => 'PUT',
'parameters' => array(
'readsetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),
)
)
);
$this->variants = new Analytify_Google_Service_Genomics_Variants_Resource(
$this,
$this->serviceName,
'variants',
array(
'methods' => array(
'create' => array(
'path' => 'variants',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'variants/{variantId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'export' => array(
'path' => 'variants/export',
'httpMethod' => 'POST',
'parameters' => array(),
),'get' => array(
'path' => 'variants/{variantId}',
'httpMethod' => 'GET',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'getSummary' => array(
'path' => 'variants/summary',
'httpMethod' => 'GET',
'parameters' => array(
'datasetId' => array(
'location' => 'query',
'type' => 'string',
),
),
),'import' => array(
'path' => 'variants/import',
'httpMethod' => 'POST',
'parameters' => array(),
),'patch' => array(
'path' => 'variants/{variantId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'variants/search',
'httpMethod' => 'POST',
'parameters' => array(),
),'update' => array(
'path' => 'variants/{variantId}',
'httpMethod' => 'PUT',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),
)
)
);
}
}
/**
* The "beacons" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $beacons = $genomicsService->beacons;
* </code>
*/
class Analytify_Google_Service_Genomics_Beacons_Resource extends Analytify_Google_Service_Resource
{
/**
* This is an experimental API that provides a Global Alliance for Genomics and
* Health Beacon. It may change at any time. (beacons.get)
*
* @param string $datasetId
* The ID of the dataset to query over. It must be public. Private datasets will return an
* unauthorized exception.
* @param array $optParams Optional parameters.
*
* @opt_param string allele
* Required. The allele to look for ('A', 'C', 'G' or 'T').
* @opt_param string contig
* Required. The contig to query over.
* @opt_param string position
* Required. The 1-based position to query at.
* @return Analytify_Google_Service_Genomics_Beacon
*/
public function get($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Beacon");
}
}
/**
* The "callsets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $callsets = $genomicsService->callsets;
* </code>
*/
class Analytify_Google_Service_Genomics_Callsets_Resource extends Analytify_Google_Service_Resource
{
/**
* Creates a new callset. (callsets.create)
*
* @param Analytify_Google_Callset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Callset
*/
public function create(Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Callset");
}
/**
* Deletes a callset. (callsets.delete)
*
* @param string $callsetId
* The ID of the callset to be deleted.
* @param array $optParams Optional parameters.
*/
public function delete($callsetId, $optParams = array())
{
$params = array('callsetId' => $callsetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params));
}
/**
* Gets a callset by ID. (callsets.get)
*
* @param string $callsetId
* The ID of the callset.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Callset
*/
public function get($callsetId, $optParams = array())
{
$params = array('callsetId' => $callsetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Callset");
}
/**
* Updates a callset. This method supports patch semantics. (callsets.patch)
*
* @param string $callsetId
* The ID of the callset to be updated.
* @param Analytify_Google_Callset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Callset
*/
public function patch($callsetId, Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array())
{
$params = array('callsetId' => $callsetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Callset");
}
/**
* Gets a list of callsets matching the criteria. (callsets.search)
*
* @param Analytify_Google_SearchCallsetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_SearchCallsetsResponse
*/
public function search(Analytify_Google_Service_Genomics_SearchCallsetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchCallsetsResponse");
}
/**
* Updates a callset. (callsets.update)
*
* @param string $callsetId
* The ID of the callset to be updated.
* @param Analytify_Google_Callset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Callset
*/
public function update($callsetId, Analytify_Google_Service_Genomics_Callset $postBody, $optParams = array())
{
$params = array('callsetId' => $callsetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Callset");
}
}
/**
* The "datasets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $datasets = $genomicsService->datasets;
* </code>
*/
class Analytify_Google_Service_Genomics_Datasets_Resource extends Analytify_Google_Service_Resource
{
/**
* Creates a new dataset. (datasets.create)
*
* @param Analytify_Google_Dataset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Dataset
*/
public function create(Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Dataset");
}
/**
* Deletes a dataset. (datasets.delete)
*
* @param string $datasetId
* The ID of the dataset to be deleted.
* @param array $optParams Optional parameters.
*/
public function delete($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params));
}
/**
* Gets a dataset by ID. (datasets.get)
*
* @param string $datasetId
* The ID of the dataset.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Dataset
*/
public function get($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Dataset");
}
/**
* Lists all datasets. (datasets.listDatasets)
*
* @param array $optParams Optional parameters.
*
* @opt_param string pageToken
* The continuation token, which is used to page through large result sets. To get the next page of
* results, set this parameter to the value of "nextPageToken" from the previous response.
* @opt_param string maxResults
* The maximum number of results returned by this request.
* @opt_param string projectId
* Only return datasets which belong to this Google Developers Console project. Only accepts
* project numbers.
* @return Analytify_Google_Service_Genomics_ListDatasetsResponse
*/
public function listDatasets($optParams = array())
{
$params = array();
$params = array_merge($params, $optParams);
return $this->call('list', array($params), "Analytify_Google_Service_Genomics_ListDatasetsResponse");
}
/**
* Updates a dataset. This method supports patch semantics. (datasets.patch)
*
* @param string $datasetId
* The ID of the dataset to be updated.
* @param Analytify_Google_Dataset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Dataset
*/
public function patch($datasetId, Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array())
{
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Dataset");
}
/**
* Undeletes a dataset by restoring a dataset which was deleted via this API.
* This operation is only possible for a week after the deletion occurred.
* (datasets.undelete)
*
* @param string $datasetId
* The ID of the dataset to be undeleted.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Dataset
*/
public function undelete($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('undelete', array($params), "Analytify_Google_Service_Genomics_Dataset");
}
/**
* Updates a dataset. (datasets.update)
*
* @param string $datasetId
* The ID of the dataset to be updated.
* @param Analytify_Google_Dataset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Dataset
*/
public function update($datasetId, Analytify_Google_Service_Genomics_Dataset $postBody, $optParams = array())
{
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Dataset");
}
}
/**
* The "experimental" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $experimental = $genomicsService->experimental;
* </code>
*/
class Analytify_Google_Service_Genomics_Experimental_Resource extends Analytify_Google_Service_Resource
{
}
/**
* The "jobs" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $jobs = $genomicsService->jobs;
* </code>
*/
class Analytify_Google_Service_Genomics_ExperimentalJobs_Resource extends Analytify_Google_Service_Resource
{
/**
* Creates and asynchronously runs an ad-hoc job. This is an experimental call
* and may be removed or changed at any time. (jobs.create)
*
* @param Analytify_Google_ExperimentalCreateJobRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse
*/
public function create(Analytify_Google_Service_Genomics_ExperimentalCreateJobRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse");
}
}
/**
* The "jobs" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $jobs = $genomicsService->jobs;
* </code>
*/
class Analytify_Google_Service_Genomics_Jobs_Resource extends Analytify_Google_Service_Resource
{
/**
* Cancels a job by ID. Note that it is possible for partial results to be
* generated and stored for cancelled jobs. (jobs.cancel)
*
* @param string $jobId
* Required. The ID of the job.
* @param array $optParams Optional parameters.
*/
public function cancel($jobId, $optParams = array())
{
$params = array('jobId' => $jobId);
$params = array_merge($params, $optParams);
return $this->call('cancel', array($params));
}
/**
* Gets a job by ID. (jobs.get)
*
* @param string $jobId
* Required. The ID of the job.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Job
*/
public function get($jobId, $optParams = array())
{
$params = array('jobId' => $jobId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Job");
}
/**
* Gets a list of jobs matching the criteria. (jobs.search)
*
* @param Analytify_Google_SearchJobsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_SearchJobsResponse
*/
public function search(Analytify_Google_Service_Genomics_SearchJobsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchJobsResponse");
}
}
/**
* The "reads" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $reads = $genomicsService->reads;
* </code>
*/
class Analytify_Google_Service_Genomics_Reads_Resource extends Analytify_Google_Service_Resource
{
/**
* Gets a list of reads for one or more readsets. Reads search operates over a
* genomic coordinate space of reference sequence & position defined over the
* reference sequences to which the requested readsets are aligned. If a target
* positional range is specified, search returns all reads whose alignment to
* the reference genome overlap the range. A query which specifies only readset
* IDs yields all reads in those readsets, including unmapped reads. All reads
* returned (including reads on subsequent pages) are ordered by genomic
* coordinate (reference sequence & position). Reads with equivalent genomic
* coordinates are returned in a deterministic order. (reads.search)
*
* @param Analytify_Google_SearchReadsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_SearchReadsResponse
*/
public function search(Analytify_Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchReadsResponse");
}
}
/**
* The "readsets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $readsets = $genomicsService->readsets;
* </code>
*/
class Analytify_Google_Service_Genomics_Readsets_Resource extends Analytify_Google_Service_Resource
{
/**
* Deletes a readset. (readsets.delete)
*
* @param string $readsetId
* The ID of the readset to be deleted. The caller must have WRITE permissions to the dataset
* associated with this readset.
* @param array $optParams Optional parameters.
*/
public function delete($readsetId, $optParams = array())
{
$params = array('readsetId' => $readsetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params));
}
/**
* Exports readsets to a BAM file in Google Cloud Storage. Note that currently
* there may be some differences between exported BAM files and the original BAM
* file at the time of import. In particular, comments in the input file header
* will not be preserved, and some custom tags will be converted to strings.
* (readsets.export)
*
* @param Analytify_Google_ExportReadsetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_ExportReadsetsResponse
*/
public function export(Analytify_Google_Service_Genomics_ExportReadsetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('export', array($params), "Analytify_Google_Service_Genomics_ExportReadsetsResponse");
}
/**
* Gets a readset by ID. (readsets.get)
*
* @param string $readsetId
* The ID of the readset.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Readset
*/
public function get($readsetId, $optParams = array())
{
$params = array('readsetId' => $readsetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Readset");
}
/**
* Creates readsets by asynchronously importing the provided information. Note
* that currently comments in the input file header are not imported and some
* custom tags will be converted to strings, rather than preserving tag types.
* The caller must have WRITE permissions to the dataset. (readsets.import)
*
* @param Analytify_Google_ImportReadsetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_ImportReadsetsResponse
*/
public function import(Analytify_Google_Service_Genomics_ImportReadsetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('import', array($params), "Analytify_Google_Service_Genomics_ImportReadsetsResponse");
}
/**
* Updates a readset. This method supports patch semantics. (readsets.patch)
*
* @param string $readsetId
* The ID of the readset to be updated. The caller must have WRITE permissions to the dataset
* associated with this readset.
* @param Analytify_Google_Readset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Readset
*/
public function patch($readsetId, Analytify_Google_Service_Genomics_Readset $postBody, $optParams = array())
{
$params = array('readsetId' => $readsetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Readset");
}
/**
* Gets a list of readsets matching the criteria. (readsets.search)
*
* @param Analytify_Google_SearchReadsetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_SearchReadsetsResponse
*/
public function search(Analytify_Google_Service_Genomics_SearchReadsetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchReadsetsResponse");
}
/**
* Updates a readset. (readsets.update)
*
* @param string $readsetId
* The ID of the readset to be updated. The caller must have WRITE permissions to the dataset
* associated with this readset.
* @param Analytify_Google_Readset $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Readset
*/
public function update($readsetId, Analytify_Google_Service_Genomics_Readset $postBody, $optParams = array())
{
$params = array('readsetId' => $readsetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Readset");
}
}
/**
* The "variants" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Analytify_Google_Service_Genomics(...);
* $variants = $genomicsService->variants;
* </code>
*/
class Analytify_Google_Service_Genomics_Variants_Resource extends Analytify_Google_Service_Resource
{
/**
* Creates a new variant. (variants.create)
*
* @param Analytify_Google_Variant $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Variant
*/
public function create(Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Analytify_Google_Service_Genomics_Variant");
}
/**
* Deletes a variant. (variants.delete)
*
* @param string $variantId
* The ID of the variant to be deleted.
* @param array $optParams Optional parameters.
*/
public function delete($variantId, $optParams = array())
{
$params = array('variantId' => $variantId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params));
}
/**
* Exports variant data to an external destination. (variants.export)
*
* @param Analytify_Google_ExportVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_ExportVariantsResponse
*/
public function export(Analytify_Google_Service_Genomics_ExportVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('export', array($params), "Analytify_Google_Service_Genomics_ExportVariantsResponse");
}
/**
* Gets a variant by ID. (variants.get)
*
* @param string $variantId
* The ID of the variant.
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Variant
*/
public function get($variantId, $optParams = array())
{
$params = array('variantId' => $variantId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Analytify_Google_Service_Genomics_Variant");
}
/**
* Gets a summary of all the variant data in a dataset. (variants.getSummary)
*
* @param array $optParams Optional parameters.
*
* @opt_param string datasetId
* Required. The ID of the dataset to get variant summary information for.
* @return Analytify_Google_Service_Genomics_GetVariantsSummaryResponse
*/
public function getSummary($optParams = array())
{
$params = array();
$params = array_merge($params, $optParams);
return $this->call('getSummary', array($params), "Analytify_Google_Service_Genomics_GetVariantsSummaryResponse");
}
/**
* Creates variant data by asynchronously importing the provided information.
* (variants.import)
*
* @param Analytify_Google_ImportVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_ImportVariantsResponse
*/
public function import(Analytify_Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('import', array($params), "Analytify_Google_Service_Genomics_ImportVariantsResponse");
}
/**
* Updates a variant. This method supports patch semantics. (variants.patch)
*
* @param string $variantId
* The ID of the variant to be updated..
* @param Analytify_Google_Variant $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Variant
*/
public function patch($variantId, Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array())
{
$params = array('variantId' => $variantId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Analytify_Google_Service_Genomics_Variant");
}
/**
* Gets a list of variants matching the criteria. (variants.search)
*
* @param Analytify_Google_SearchVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_SearchVariantsResponse
*/
public function search(Analytify_Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Analytify_Google_Service_Genomics_SearchVariantsResponse");
}
/**
* Updates a variant. (variants.update)
*
* @param string $variantId
* The ID of the variant to be updated..
* @param Analytify_Google_Variant $postBody
* @param array $optParams Optional parameters.
* @return Analytify_Google_Service_Genomics_Variant
*/
public function update($variantId, Analytify_Google_Service_Genomics_Variant $postBody, $optParams = array())
{
$params = array('variantId' => $variantId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('update', array($params), "Analytify_Google_Service_Genomics_Variant");
}
}
class Analytify_Google_Service_Genomics_Beacon extends Analytify_Google_Model
{
public $exists;
public function setExists($exists)
{
$this->exists = $exists;
}
public function getExists()
{
return $this->exists;
}
}
class Analytify_Google_Service_Genomics_Call extends Analytify_Google_Collection
{
public $callsetId;
public $callsetName;
public $genotype;
public $genotypeLikelihood;
public $info;
public $phaseset;
public function setCallsetId($callsetId)
{
$this->callsetId = $callsetId;
}
public function getCallsetId()
{
return $this->callsetId;
}
public function setCallsetName($callsetName)
{
$this->callsetName = $callsetName;
}
public function getCallsetName()
{
return $this->callsetName;
}
public function setGenotype($genotype)
{
$this->genotype = $genotype;
}
public function getGenotype()
{
return $this->genotype;
}
public function setGenotypeLikelihood($genotypeLikelihood)
{
$this->genotypeLikelihood = $genotypeLikelihood;
}
public function getGenotypeLikelihood()
{
return $this->genotypeLikelihood;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setPhaseset($phaseset)
{
$this->phaseset = $phaseset;
}
public function getPhaseset()
{
return $this->phaseset;
}
}
class Analytify_Google_Service_Genomics_CallInfo extends Analytify_Google_Model
{
}
class Analytify_Google_Service_Genomics_Callset extends Analytify_Google_Model
{
public $created;
public $datasetId;
public $id;
public $info;
public $name;
public function setCreated($created)
{
$this->created = $created;
}
public function getCreated()
{
return $this->created;
}
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
}
class Analytify_Google_Service_Genomics_CallsetInfo extends Analytify_Google_Model
{
}
class Analytify_Google_Service_Genomics_ContigBound extends Analytify_Google_Model
{
public $contig;
public $upperBound;
public function setContig($contig)
{
$this->contig = $contig;
}
public function getContig()
{
return $this->contig;
}
public function setUpperBound($upperBound)
{
$this->upperBound = $upperBound;
}
public function getUpperBound()
{
return $this->upperBound;
}
}
class Analytify_Google_Service_Genomics_Dataset extends Analytify_Google_Model
{
public $id;
public $isPublic;
public $name;
public $projectId;
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setIsPublic($isPublic)
{
$this->isPublic = $isPublic;
}
public function getIsPublic()
{
return $this->isPublic;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
}
class Analytify_Google_Service_Genomics_ExperimentalCreateJobRequest extends Analytify_Google_Collection
{
public $align;
public $callVariants;
public $gcsOutputPath;
public $pairedSourceUris;
public $projectId;
public $sourceUris;
public function setAlign($align)
{
$this->align = $align;
}
public function getAlign()
{
return $this->align;
}
public function setCallVariants($callVariants)
{
$this->callVariants = $callVariants;
}
public function getCallVariants()
{
return $this->callVariants;
}
public function setGcsOutputPath($gcsOutputPath)
{
$this->gcsOutputPath = $gcsOutputPath;
}
public function getGcsOutputPath()
{
return $this->gcsOutputPath;
}
public function setPairedSourceUris($pairedSourceUris)
{
$this->pairedSourceUris = $pairedSourceUris;
}
public function getPairedSourceUris()
{
return $this->pairedSourceUris;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setSourceUris($sourceUris)
{
$this->sourceUris = $sourceUris;
}
public function getSourceUris()
{
return $this->sourceUris;
}
}
class Analytify_Google_Service_Genomics_ExperimentalCreateJobResponse extends Analytify_Google_Model
{
public $jobId;
public function setJobId($jobId)
{
$this->jobId = $jobId;
}
public function getJobId()
{
return $this->jobId;
}
}
class Analytify_Google_Service_Genomics_ExportReadsetsRequest extends Analytify_Google_Collection
{
public $exportUri;
public $projectId;
public $readsetIds;
public function setExportUri($exportUri)
{
$this->exportUri = $exportUri;
}
public function getExportUri()
{
return $this->exportUri;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setReadsetIds($readsetIds)
{
$this->readsetIds = $readsetIds;
}
public function getReadsetIds()
{
return $this->readsetIds;
}
}
class Analytify_Google_Service_Genomics_ExportReadsetsResponse extends Analytify_Google_Model
{
public $jobId;
public function setJobId($jobId)
{
$this->jobId = $jobId;
}
public function getJobId()
{
return $this->jobId;
}
}
class Analytify_Google_Service_Genomics_ExportVariantsRequest extends Analytify_Google_Collection
{
public $bigqueryDataset;
public $bigqueryTable;
public $callsetIds;
public $datasetId;
public $format;
public $projectId;
public function setBigqueryDataset($bigqueryDataset)
{
$this->bigqueryDataset = $bigqueryDataset;
}
public function getBigqueryDataset()
{
return $this->bigqueryDataset;
}
public function setBigqueryTable($bigqueryTable)
{
$this->bigqueryTable = $bigqueryTable;
}
public function getBigqueryTable()
{
return $this->bigqueryTable;
}
public function setCallsetIds($callsetIds)
{
$this->callsetIds = $callsetIds;
}
public function getCallsetIds()
{
return $this->callsetIds;
}
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setFormat($format)
{
$this->format = $format;
}
public function getFormat()
{
return $this->format;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
}
class Analytify_Google_Service_Genomics_ExportVariantsResponse extends Analytify_Google_Model
{
public $jobId;
public function setJobId($jobId)
{
$this->jobId = $jobId;
}
public function getJobId()
{
return $this->jobId;
}
}
class Analytify_Google_Service_Genomics_GetVariantsSummaryResponse extends Analytify_Google_Collection
{
protected $contigBoundsType = 'Analytify_Google_Service_Genomics_ContigBound';
protected $contigBoundsDataType = 'array';
protected $metadataType = 'Analytify_Google_Service_Genomics_Metadata';
protected $metadataDataType = 'array';
public function setContigBounds($contigBounds)
{
$this->contigBounds = $contigBounds;
}
public function getContigBounds()
{
return $this->contigBounds;
}
public function setMetadata($metadata)
{
$this->metadata = $metadata;
}
public function getMetadata()
{
return $this->metadata;
}
}
class Analytify_Google_Service_Genomics_Header extends Analytify_Google_Model
{
public $sortingOrder;
public $version;
public function setSortingOrder($sortingOrder)
{
$this->sortingOrder = $sortingOrder;
}
public function getSortingOrder()
{
return $this->sortingOrder;
}
public function setVersion($version)
{
$this->version = $version;
}
public function getVersion()
{
return $this->version;
}
}
class Analytify_Google_Service_Genomics_HeaderSection extends Analytify_Google_Collection
{
public $comments;
public $fileUri;
protected $headersType = 'Analytify_Google_Service_Genomics_Header';
protected $headersDataType = 'array';
protected $programsType = 'Analytify_Google_Service_Genomics_Program';
protected $programsDataType = 'array';
protected $readGroupsType = 'Analytify_Google_Service_Genomics_ReadGroup';
protected $readGroupsDataType = 'array';
protected $refSequencesType = 'Analytify_Google_Service_Genomics_ReferenceSequence';
protected $refSequencesDataType = 'array';
public function setComments($comments)
{
$this->comments = $comments;
}
public function getComments()
{
return $this->comments;
}
public function setFileUri($fileUri)
{
$this->fileUri = $fileUri;
}
public function getFileUri()
{
return $this->fileUri;
}
public function setHeaders($headers)
{
$this->headers = $headers;
}
public function getHeaders()
{
return $this->headers;
}
public function setPrograms($programs)
{
$this->programs = $programs;
}
public function getPrograms()
{
return $this->programs;
}
public function setReadGroups($readGroups)
{
$this->readGroups = $readGroups;
}
public function getReadGroups()
{
return $this->readGroups;
}
public function setRefSequences($refSequences)
{
$this->refSequences = $refSequences;
}
public function getRefSequences()
{
return $this->refSequences;
}
}
class Analytify_Google_Service_Genomics_ImportReadsetsRequest extends Analytify_Google_Collection
{
public $datasetId;
public $sourceUris;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setSourceUris($sourceUris)
{
$this->sourceUris = $sourceUris;
}
public function getSourceUris()
{
return $this->sourceUris;
}
}
class Analytify_Google_Service_Genomics_ImportReadsetsResponse extends Analytify_Google_Model
{
public $jobId;
public function setJobId($jobId)
{
$this->jobId = $jobId;
}
public function getJobId()
{
return $this->jobId;
}
}
class Analytify_Google_Service_Genomics_ImportVariantsRequest extends Analytify_Google_Collection
{
public $datasetId;
public $sourceUris;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setSourceUris($sourceUris)
{
$this->sourceUris = $sourceUris;
}
public function getSourceUris()
{
return $this->sourceUris;
}
}
class Analytify_Google_Service_Genomics_ImportVariantsResponse extends Analytify_Google_Model
{
public $jobId;
public function setJobId($jobId)
{
$this->jobId = $jobId;
}
public function getJobId()
{
return $this->jobId;
}
}
class Analytify_Google_Service_Genomics_Job extends Analytify_Google_Collection
{
public $created;
public $description;
public $errors;
public $id;
public $importedIds;
public $projectId;
public $status;
public $warnings;
public function setCreated($created)
{
$this->created = $created;
}
public function getCreated()
{
return $this->created;
}
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setErrors($errors)
{
$this->errors = $errors;
}
public function getErrors()
{
return $this->errors;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setImportedIds($importedIds)
{
$this->importedIds = $importedIds;
}
public function getImportedIds()
{
return $this->importedIds;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setStatus($status)
{
$this->status = $status;
}
public function getStatus()
{
return $this->status;
}
public function setWarnings($warnings)
{
$this->warnings = $warnings;
}
public function getWarnings()
{
return $this->warnings;
}
}
class Analytify_Google_Service_Genomics_ListDatasetsResponse extends Analytify_Google_Collection
{
protected $datasetsType = 'Analytify_Google_Service_Genomics_Dataset';
protected $datasetsDataType = 'array';
public $nextPageToken;
public function setDatasets($datasets)
{
$this->datasets = $datasets;
}
public function getDatasets()
{
return $this->datasets;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Analytify_Google_Service_Genomics_Metadata extends Analytify_Google_Model
{
public $description;
public $id;
public $info;
public $key;
public $number;
public $type;
public $value;
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setKey($key)
{
$this->key = $key;
}
public function getKey()
{
return $this->key;
}
public function setNumber($number)
{
$this->number = $number;
}
public function getNumber()
{
return $this->number;
}
public function setType($type)
{
$this->type = $type;
}
public function getType()
{
return $this->type;
}
public function setValue($value)
{
$this->value = $value;
}
public function getValue()
{
return $this->value;
}
}
class Analytify_Google_Service_Genomics_MetadataInfo extends Analytify_Google_Model
{
}
class Analytify_Google_Service_Genomics_Program extends Analytify_Google_Model
{
public $commandLine;
public $id;
public $name;
public $prevProgramId;
public $version;
public function setCommandLine($commandLine)
{
$this->commandLine = $commandLine;
}
public function getCommandLine()
{
return $this->commandLine;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPrevProgramId($prevProgramId)
{
$this->prevProgramId = $prevProgramId;
}
public function getPrevProgramId()
{
return $this->prevProgramId;
}
public function setVersion($version)
{
$this->version = $version;
}
public function getVersion()
{
return $this->version;
}
}
class Analytify_Google_Service_Genomics_Read extends Analytify_Google_Model
{
public $alignedBases;
public $baseQuality;
public $cigar;
public $flags;
public $id;
public $mappingQuality;
public $matePosition;
public $mateReferenceSequenceName;
public $name;
public $originalBases;
public $position;
public $readsetId;
public $referenceSequenceName;
public $tags;
public $templateLength;
public function setAlignedBases($alignedBases)
{
$this->alignedBases = $alignedBases;
}
public function getAlignedBases()
{
return $this->alignedBases;
}
public function setBaseQuality($baseQuality)
{
$this->baseQuality = $baseQuality;
}
public function getBaseQuality()
{
return $this->baseQuality;
}
public function setCigar($cigar)
{
$this->cigar = $cigar;
}
public function getCigar()
{
return $this->cigar;
}
public function setFlags($flags)
{
$this->flags = $flags;
}
public function getFlags()
{
return $this->flags;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setMappingQuality($mappingQuality)
{
$this->mappingQuality = $mappingQuality;
}
public function getMappingQuality()
{
return $this->mappingQuality;
}
public function setMatePosition($matePosition)
{
$this->matePosition = $matePosition;
}
public function getMatePosition()
{
return $this->matePosition;
}
public function setMateReferenceSequenceName($mateReferenceSequenceName)
{
$this->mateReferenceSequenceName = $mateReferenceSequenceName;
}
public function getMateReferenceSequenceName()
{
return $this->mateReferenceSequenceName;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setOriginalBases($originalBases)
{
$this->originalBases = $originalBases;
}
public function getOriginalBases()
{
return $this->originalBases;
}
public function setPosition($position)
{
$this->position = $position;
}
public function getPosition()
{
return $this->position;
}
public function setReadsetId($readsetId)
{
$this->readsetId = $readsetId;
}
public function getReadsetId()
{
return $this->readsetId;
}
public function setReferenceSequenceName($referenceSequenceName)
{
$this->referenceSequenceName = $referenceSequenceName;
}
public function getReferenceSequenceName()
{
return $this->referenceSequenceName;
}
public function setTags($tags)
{
$this->tags = $tags;
}
public function getTags()
{
return $this->tags;
}
public function setTemplateLength($templateLength)
{
$this->templateLength = $templateLength;
}
public function getTemplateLength()
{
return $this->templateLength;
}
}
class Analytify_Google_Service_Genomics_ReadGroup extends Analytify_Google_Model
{
public $date;
public $description;
public $flowOrder;
public $id;
public $keySequence;
public $library;
public $platformUnit;
public $predictedInsertSize;
public $processingProgram;
public $sample;
public $sequencingCenterName;
public $sequencingTechnology;
public function setDate($date)
{
$this->date = $date;
}
public function getDate()
{
return $this->date;
}
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setFlowOrder($flowOrder)
{
$this->flowOrder = $flowOrder;
}
public function getFlowOrder()
{
return $this->flowOrder;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setKeySequence($keySequence)
{
$this->keySequence = $keySequence;
}
public function getKeySequence()
{
return $this->keySequence;
}
public function setLibrary($library)
{
$this->library = $library;
}
public function getLibrary()
{
return $this->library;
}
public function setPlatformUnit($platformUnit)
{
$this->platformUnit = $platformUnit;
}
public function getPlatformUnit()
{
return $this->platformUnit;
}
public function setPredictedInsertSize($predictedInsertSize)
{
$this->predictedInsertSize = $predictedInsertSize;
}
public function getPredictedInsertSize()
{
return $this->predictedInsertSize;
}
public function setProcessingProgram($processingProgram)
{
$this->processingProgram = $processingProgram;
}
public function getProcessingProgram()
{
return $this->processingProgram;
}
public function setSample($sample)
{
$this->sample = $sample;
}
public function getSample()
{
return $this->sample;
}
public function setSequencingCenterName($sequencingCenterName)
{
$this->sequencingCenterName = $sequencingCenterName;
}
public function getSequencingCenterName()
{
return $this->sequencingCenterName;
}
public function setSequencingTechnology($sequencingTechnology)
{
$this->sequencingTechnology = $sequencingTechnology;
}
public function getSequencingTechnology()
{
return $this->sequencingTechnology;
}
}
class Analytify_Google_Service_Genomics_ReadTags extends Analytify_Google_Model
{
}
class Analytify_Google_Service_Genomics_Readset extends Analytify_Google_Collection
{
public $datasetId;
protected $fileDataType = 'Analytify_Google_Service_Genomics_HeaderSection';
protected $fileDataDataType = 'array';
public $id;
public $name;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setFileData($fileData)
{
$this->fileData = $fileData;
}
public function getFileData()
{
return $this->fileData;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
}
class Analytify_Google_Service_Genomics_ReferenceSequence extends Analytify_Google_Model
{
public $assemblyId;
public $length;
public $md5Checksum;
public $name;
public $species;
public $uri;
public function setAssemblyId($assemblyId)
{
$this->assemblyId = $assemblyId;
}
public function getAssemblyId()
{
return $this->assemblyId;
}
public function setLength($length)
{
$this->length = $length;
}
public function getLength()
{
return $this->length;
}
public function setMd5Checksum($md5Checksum)
{
$this->md5Checksum = $md5Checksum;
}
public function getMd5Checksum()
{
return $this->md5Checksum;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setSpecies($species)
{
$this->species = $species;
}
public function getSpecies()
{
return $this->species;
}
public function setUri($uri)
{
$this->uri = $uri;
}
public function getUri()
{
return $this->uri;
}
}
class Analytify_Google_Service_Genomics_SearchCallsetsRequest extends Analytify_Google_Collection
{
public $datasetIds;
public $maxResults;
public $name;
public $pageToken;
public function setDatasetIds($datasetIds)
{
$this->datasetIds = $datasetIds;
}
public function getDatasetIds()
{
return $this->datasetIds;
}
public function setMaxResults($maxResults)
{
$this->maxResults = $maxResults;
}
public function getMaxResults()
{
return $this->maxResults;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
}
class Analytify_Google_Service_Genomics_SearchCallsetsResponse extends Analytify_Google_Collection
{
protected $callsetsType = 'Analytify_Google_Service_Genomics_Callset';
protected $callsetsDataType = 'array';
public $nextPageToken;
public function setCallsets($callsets)
{
$this->callsets = $callsets;
}
public function getCallsets()
{
return $this->callsets;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Analytify_Google_Service_Genomics_SearchJobsRequest extends Analytify_Google_Collection
{
public $createdAfter;
public $createdBefore;
public $maxResults;
public $pageToken;
public $projectId;
public $status;
public function setCreatedAfter($createdAfter)
{
$this->createdAfter = $createdAfter;
}
public function getCreatedAfter()
{
return $this->createdAfter;
}
public function setCreatedBefore($createdBefore)
{
$this->createdBefore = $createdBefore;
}
public function getCreatedBefore()
{
return $this->createdBefore;
}
public function setMaxResults($maxResults)
{
$this->maxResults = $maxResults;
}
public function getMaxResults()
{
return $this->maxResults;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setStatus($status)
{
$this->status = $status;
}
public function getStatus()
{
return $this->status;
}
}
class Analytify_Google_Service_Genomics_SearchJobsResponse extends Analytify_Google_Collection
{
protected $jobsType = 'Analytify_Google_Service_Genomics_Job';
protected $jobsDataType = 'array';
public $nextPageToken;
public function setJobs($jobs)
{
$this->jobs = $jobs;
}
public function getJobs()
{
return $this->jobs;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Analytify_Google_Service_Genomics_SearchReadsRequest extends Analytify_Google_Collection
{
public $maxResults;
public $pageToken;
public $readsetIds;
public $sequenceEnd;
public $sequenceName;
public $sequenceStart;
public function setMaxResults($maxResults)
{
$this->maxResults = $maxResults;
}
public function getMaxResults()
{
return $this->maxResults;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setReadsetIds($readsetIds)
{
$this->readsetIds = $readsetIds;
}
public function getReadsetIds()
{
return $this->readsetIds;
}
public function setSequenceEnd($sequenceEnd)
{
$this->sequenceEnd = $sequenceEnd;
}
public function getSequenceEnd()
{
return $this->sequenceEnd;
}
public function setSequenceName($sequenceName)
{
$this->sequenceName = $sequenceName;
}
public function getSequenceName()
{
return $this->sequenceName;
}
public function setSequenceStart($sequenceStart)
{
$this->sequenceStart = $sequenceStart;
}
public function getSequenceStart()
{
return $this->sequenceStart;
}
}
class Analytify_Google_Service_Genomics_SearchReadsResponse extends Analytify_Google_Collection
{
public $nextPageToken;
protected $readsType = 'Analytify_Google_Service_Genomics_Read';
protected $readsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setReads($reads)
{
$this->reads = $reads;
}
public function getReads()
{
return $this->reads;
}
}
class Analytify_Google_Service_Genomics_SearchReadsetsRequest extends Analytify_Google_Collection
{
public $datasetIds;
public $maxResults;
public $name;
public $pageToken;
public function setDatasetIds($datasetIds)
{
$this->datasetIds = $datasetIds;
}
public function getDatasetIds()
{
return $this->datasetIds;
}
public function setMaxResults($maxResults)
{
$this->maxResults = $maxResults;
}
public function getMaxResults()
{
return $this->maxResults;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
}
class Analytify_Google_Service_Genomics_SearchReadsetsResponse extends Analytify_Google_Collection
{
public $nextPageToken;
protected $readsetsType = 'Analytify_Google_Service_Genomics_Readset';
protected $readsetsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setReadsets($readsets)
{
$this->readsets = $readsets;
}
public function getReadsets()
{
return $this->readsets;
}
}
class Analytify_Google_Service_Genomics_SearchVariantsRequest extends Analytify_Google_Collection
{
public $callsetIds;
public $callsetNames;
public $contig;
public $datasetId;
public $endPosition;
public $maxResults;
public $pageToken;
public $startPosition;
public $variantName;
public function setCallsetIds($callsetIds)
{
$this->callsetIds = $callsetIds;
}
public function getCallsetIds()
{
return $this->callsetIds;
}
public function setCallsetNames($callsetNames)
{
$this->callsetNames = $callsetNames;
}
public function getCallsetNames()
{
return $this->callsetNames;
}
public function setContig($contig)
{
$this->contig = $contig;
}
public function getContig()
{
return $this->contig;
}
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setEndPosition($endPosition)
{
$this->endPosition = $endPosition;
}
public function getEndPosition()
{
return $this->endPosition;
}
public function setMaxResults($maxResults)
{
$this->maxResults = $maxResults;
}
public function getMaxResults()
{
return $this->maxResults;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setStartPosition($startPosition)
{
$this->startPosition = $startPosition;
}
public function getStartPosition()
{
return $this->startPosition;
}
public function setVariantName($variantName)
{
$this->variantName = $variantName;
}
public function getVariantName()
{
return $this->variantName;
}
}
class Analytify_Google_Service_Genomics_SearchVariantsResponse extends Analytify_Google_Collection
{
public $nextPageToken;
protected $variantsType = 'Analytify_Google_Service_Genomics_Variant';
protected $variantsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setVariants($variants)
{
$this->variants = $variants;
}
public function getVariants()
{
return $this->variants;
}
}
class Analytify_Google_Service_Genomics_Variant extends Analytify_Google_Collection
{
public $alternateBases;
protected $callsType = 'Analytify_Google_Service_Genomics_Call';
protected $callsDataType = 'array';
public $contig;
public $created;
public $datasetId;
public $end;
public $id;
public $info;
public $names;
public $position;
public $referenceBases;
public function setAlternateBases($alternateBases)
{
$this->alternateBases = $alternateBases;
}
public function getAlternateBases()
{
return $this->alternateBases;
}
public function setCalls($calls)
{
$this->calls = $calls;
}
public function getCalls()
{
return $this->calls;
}
public function setContig($contig)
{
$this->contig = $contig;
}
public function getContig()
{
return $this->contig;
}
public function setCreated($created)
{
$this->created = $created;
}
public function getCreated()
{
return $this->created;
}
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setNames($names)
{
$this->names = $names;
}
public function getNames()
{
return $this->names;
}
public function setPosition($position)
{
$this->position = $position;
}
public function getPosition()
{
return $this->position;
}
public function setReferenceBases($referenceBases)
{
$this->referenceBases = $referenceBases;
}
public function getReferenceBases()
{
return $this->referenceBases;
}
}
class Analytify_Google_Service_Genomics_VariantInfo extends Analytify_Google_Model
{
}